Introduction | Demos | Installation | Full | Minimum | Most recent | Linux | Main functionalities | SPS example usage | Load package | Initialize SPS project | SPS project structure | Launch SPS | Workflow management | 1. setup a workflow | 2. Prepare a target file | 3. Prepare a workflow object | R step and sysArgs step | View and modify steps | Create a new step | 4. Prepare CWL files (optional) | 5. Run or finish workflow preparation | RNA-Seq Module | Prepare metadata and count table | Process raw count | Plot options | DEG report | Interact with other bioconductor packages. | Locally | Remotely | Quick {ggplot} module | Canvas | Advanced features | Session Information